NameScaffolding dockerin binding protein A
SynonymsNot Available
Gene NamesdbA
OrganismClostridium thermocellum
Amino acid sequence
>lcl|BSEQ0011923|Scaffolding dockerin binding protein A
MRKKKRLISLLLAVFIAVACLPAGIARADKASSIELKFDRNKGEVGDILIGTVRINNIKN
FAGFQVNIVYDPKVLMAVDPETGKEFTSSTFPPGRTVLKNNAYGPIQIADNDPEKGILNF
ALAYSYIAGYKETGVAEESGIIAKIGFKILQKKSTAVKFQDTLSMPGAISGTQLFDWDGE
VITGYEVIQPDVLSLGDEPYETPGTDIPISDNPAATPSSTPSVTPSPEVKPTQTPSPAEN
SAKVELEPVLDNATGEAKAAIDEEKLNKALDEAKKSEDDKLVELNIKKVENADAYIQQLP
AKFLIKSDAEYKLRIATEQGIIEVPANMLNTADISKLVKNDSVVEFVIRKVKVDELGAEL
KEKIGNRPVIDISVVVDGKKVEWSNYKAKVKISIPYKPDAKELENHEHIVVLHIDDAGKA
VSVPSGKYEPSLGVVTFETNHLSKYAVSYVYKTFADIGSYAWAKKQIEVLASKGVINGTS
DTTFTPQADITRADFMILLVKALGLTAEVTSNFDDVSEKDYYYEYVGIAKELGITTGVGN
NKFNPKAKITRQDMMVLTTNALRIAGKISSTGTRADVERFSDKDQIASYAVEGVATLVKE
GIVVGSGDIINPRGNASRAELAAIIYKIYYK
Number of residues631
Molecular Weight68618.73
Theoretical pI5.21
GO Classification
Functions
  • carbohydrate binding
Processes
  • polysaccharide catabolic process
General FunctionCarbohydrate binding
Specific FunctionNot Available
Pfam Domain Function
Transmembrane RegionsNot Available
GenBank Protein IDNot Available
UniProtKB IDP71143
UniProtKB Entry NameP71143_CLOTM
Cellular LocationNot Available
Gene sequence
>lcl|BSEQ0005346|1896 bp
ATGAGGAAGAAAAAAAGATTAATATCATTACTGCTTGCGGTTTTTATCGCCGTTGCATGT
CTGCCGGCGGGAATTGCAAGGGCAGATAAAGCCTCGAGCATTGAGCTTAAGTTTGACCGC
AATAAGGGAGAAGTTGGAGATATACTTATTGGTACCGTAAGGATAAACAATATCAAGAAT
TTCGCAGGATTTCAGGTAAACATTGTATATGATCCAAAAGTCTTAATGGCTGTTGACCCT
GAAACGGGGAAAGAATTTACTTCTTCAACATTTCCGCCAGGACGCACTGTACTGAAAAAC
AATGCTTACGGCCCAATACAGATTGCGGACAATGATCCGGAAAAAGGGATACTGAACTTC
GCGCTTGCATATTCATATATTGCGGGATACAAAGAAACAGGAGTAGCGGAGGAAAGCGGC
ATAATTGCGAAAATTGGATTTAAAATACTCCAGAAAAAGAGCACTGCCGTAAAATTCCAG
GATACATTAAGCATGCCCGGAGCTATTTCGGGAACACAGCTGTTTGACTGGGACGGAGAA
GTTATTACCGGATATGAGGTAATACAGCCGGATGTGCTGAGTTTGGGTGACGAGCCTTAT
GAGACACCGGGAACGGATATTCCGATATCCGACAATCCGGCAGCAACTCCGTCATCCACG
CCGTCAGTTACTCCTTCACCGGAAGTTAAACCGACTCAGACGCCTTCGCCTGCAGAAAAT
TCTGCAAAAGTGGAGCTTGAACCTGTGTTGGATAATGCAACAGGAGAAGCAAAGGCGGCA
ATAGATGAAGAAAAATTAAACAAGGCTCTTGATGAAGCGAAAAAATCGGAAGATGACAAA
CTTGTGGAACTTAACATAAAGAAGGTTGAAAATGCCGATGCTTACATACAACAGCTTCCG
GCGAAATTCCTGATAAAAAGTGACGCCGAATATAAGCTGAGAATAGCTACAGAGCAGGGA
ATTATAGAAGTACCGGCCAACATGCTGAATACTGCGGATATTTCAAAGCTTGTAAAAAAT
GACTCCGTTGTTGAATTCGTCATAAGAAAAGTAAAAGTCGATGAACTTGGTGCAGAGCTC
AAAGAGAAGATAGGCAACAGGCCGGTGATTGACATAAGCGTGGTTGTTGACGGCAAAAAA
GTTGAATGGAGCAATTACAAAGCCAAGGTTAAAATATCAATTCCTTACAAGCCTGATGCA
AAAGAGCTGGAGAACCACGAGCATATTGTTGTACTCCATATTGATGACGCCGGCAAGGCA
GTTTCCGTACCCAGCGGAAAATATGAACCTTCTTTGGGCGTCGTTACGTTTGAGACGAAT
CATTTAAGCAAGTATGCGGTTTCATATGTTTACAAGACTTTCGCGGATATTGGTTCATAT
GCCTGGGCTAAAAAGCAGATAGAGGTTTTGGCTTCCAAAGGAGTAATTAACGGTACATCC
GATACCACTTTTACGCCCCAGGCAGACATAACAAGGGCGGATTTCATGATACTTCTTGTA
AAGGCACTGGGATTGACTGCCGAGGTTACTTCCAATTTTGATGATGTGTCCGAAAAAGAC
TACTATTATGAATACGTGGGAATTGCAAAAGAGCTTGGAATTACGACAGGAGTCGGAAAC
AACAAGTTCAATCCGAAAGCCAAAATTACAAGACAGGATATGATGGTACTTACAACAAAT
GCTCTCAGGATTGCAGGAAAAATATCGAGCACAGGAACCCGCGCTGATGTTGAAAGATTT
TCGGACAAGGACCAGATAGCTTCATATGCGGTTGAAGGCGTTGCAACCTTGGTAAAAGAA
GGTATTGTAGTGGGAAGCGGCGATATTATAAATCCAAGGGGAAATGCTTCAAGAGCCGAA
CTTGCAGCAATCATATACAAGATTTACTACAAGTAA
GenBank Gene IDU49980
GeneCard IDNot Available
GenAtlas IDNot Available
HGNC IDNot Available
Chromosome LocationNot Available
LocusNot Available
References
  1. Leibovitz E, Beguin P: A new type of cohesin domain that specifically binds the dockerin domain of the Clostridium thermocellum cellulosome-integrating protein CipA. J Bacteriol. 1996 Jun;178(11):3077-84. 8655483
  2. Carvalho AL, Pires VM, Gloster TM, Turkenburg JP, Prates JA, Ferreira LM, Romao MJ, Davies GJ, Fontes CM, Gilbert HJ: Insights into the structural determinants of cohesin-dockerin specificity revealed by the crystal structure of the type II cohesin from Clostridium thermocellum SdbA. J Mol Biol. 2005 Jun 24;349(5):909-15. 15913653
  3. Currie MA, Adams JJ, Faucher F, Bayer EA, Jia Z, Smith SP: Scaffoldin conformation and dynamics revealed by a ternary complex from the Clostridium thermocellum cellulosome. J Biol Chem. 2012 Aug 3;287(32):26953-61. doi: 10.1074/jbc.M112.343897. Epub 2012 Jun 15. 22707718